Data and command line scripts described in the "RNA-seq for bacterial gene expression" unit in Current protocols in nucleic acid chemistry

Download an example of the data analysis workflow and the collapse script:

• Workflow for data analysis
• Collapse script

Download the provided RNA-seq dataset:

• RNA-seq on total RNA
• RNA-seq on ribozero treated RNA
• RNA-seq on TEX treated RNA

Download RNAprobR preprocessing script (described in "Reproducible analysis of sequencing based RNA structure probing data with user-friendly tools"):

• RNAprobR R package
• RNAprobR including the preprocessing script

Contact information:

• Line Dahl Poulsen
• Jeppe Vinther