SAM - Sequence Alignment and Modeling

SAM - Sequence Alignment and Modeling

This software can be used for making Hidden Markov Models (HMMs) of families of proteins or DNA. The HMMs are very good for aligning sequences and searching databases. This work was done in collaboration with Richard Hughey and others in the computational biology group at UC Santa Cruz.

Press here to be beamed to the web page in Santa Cruz, describing the software, and how to get it.

The basic HMM methods are described in our papers, some of which you can find in post script if you press here.


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Last updated 31-Jul-97 by Anders Krogh, krogh@cbs.dtu.dk