SAM - Sequence Alignment and Modeling
SAM - Sequence Alignment and Modeling
This software can be used for making
Hidden Markov Models (HMMs) of families of proteins or DNA.
The HMMs are very good for aligning sequences and searching
databases. This work was done in collaboration with
Richard
Hughey and others in the
computational
biology group at UC Santa Cruz.
Press here
to be beamed to the web page in Santa Cruz, describing the
software, and how to get it.
The basic HMM methods are described in our papers, some of which you
can find in post script if you press here.
Go to Anders Krogh's home page
Go to the CBS home page
Last updated 31-Jul-97
by Anders Krogh, krogh@cbs.dtu.dk